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ASmiR Selection

Solanum lycopersicum circular RNA overlap with linear RNA AS region

Total 42 records in 2 Pages. Current page: 1
1/2 1 2 Next> Last>>

  • IDGene_nameAsregionStrandTypecirc_namecirc_regionSequence Description
    1
    Solyc02g020980.2
    -
    ExonS
    sly_circ_000293
    ch02:20822830-20825544
    4-alpha-glucanotransferase (Q6R608_SOLTU)
    2
    Solyc01g112290.2
    +
    ExonS
    sly_circ_000946
    ch01:98358813-98359417
    Glutamyl-tRNA synthetase (Q52JJ5_NICBE)
    3
    Solyc01g056760.2
    +
    ExonS
    sly_circ_000879
    ch01:56472387-56475756
    DNA-binding protein HEXBP (HEXP_LEIMA)
    4
    Solyc12g021170.1
    +
    ExonS
    sly_circ_000257
    ch12:14513455-14517797
    Electron-transfer flavoprotein ubiquinone oxidoreductase (D7LK13_ARALY)
    5
    Solyc09g064920.2
    -
    ExonS
    sly_circ_000829
    ch09:62445803-62446203
    BHLH transcription factor (B6U846_MAIZE)
    6
    Solyc03g059260.2
    -
    AltD
    sly_circ_000385
    ch03:28188273-28188869
    Carboxyl-terminal-processing protease (B6T6L2_MAIZE)
    7
    Solyc05g018620.2
    -
    ExonS
    sly_circ_000551
    ch05:22621180-22625501
    Regulator of chromosome condensation (RCC1)-like protein (D0NEM9_PHYIN)
    8
    Solyc05g012020.2
    -
    ExonS
    sly_circ_001114
    ch05:5225922-5227056
    ripening inhibitor (manually curated)
    9
    Solyc05g012020.2
    -
    ExonS
    sly_circ_001114
    ch05:5225922-5227056
    ripening inhibitor (manually curated)
    10
    Solyc05g009870.2
    -
    ExonS
    sly_circ_000538
    ch05:4080912-4083836
    Baculoviral IAP repeat-containing 8 (Q6PIA0_HUMAN)
    11
    Solyc03g123700.2
    +
    ExonS
    sly_circ_001048
    ch03:70459987-70461341
    NUMOD3 motif family protein expressed (Q109Y3_ORYSJ)
    12
    Solyc01g097320.2
    -
    ExonS
    sly_circ_000073
    ch01:88219309-88220388
    Mediator of RNA polymerase II transcription subunit 14 (Predicted) (B4USR1_OTOGA)
    13
    Solyc05g006760.2
    +
    ExonS
    sly_circ_001107
    ch05:1387522-1388010
    Tetratricopeptide repeat protein 38 (TTC38_XENTR)
    14
    Solyc09g018750.2
    -
    ExonS
    sly_circ_000814
    ch09:16844062-16844477
    Inosine-5&apos-monophosphate dehydrogenase (Q0KFK7_RALEH)
    15
    Solyc07g006120.2
    +
    ExonS
    sly_circ_000647
    ch07:976732-977512
    WD repeat domain phosphoinositide-interacting protein (C0SB49_PARBP)
    16
    Solyc07g047800.2
    -
    IntronR
    sly_circ_000697
    ch07:59014613-59015192
    Short-chain dehydrogenase/reductase family protein (D7L9J1_ARALY)
    17
    Solyc01g098160.2
    -
    ExonS
    sly_circ_000075
    ch01:88734969-88739363
    Cell division protein kinase 12 (CDK12_HUMAN)
    18
    Solyc05g056590.2
    +
    ExonS
    sly_circ_000575
    ch05:65858043-65863655
    Regulator of chromosome condensation RCC1 domain-containing protein (B9PXR3_TOXGO)
    19
    Solyc05g056590.2
    +
    ExonS
    sly_circ_001148
    ch05:65858043-65859273
    Regulator of chromosome condensation RCC1 domain-containing protein (B9PXR3_TOXGO)
    20
    Solyc09g008020.2
    +
    ExonS
    sly_circ_000798
    ch09:1500972-1502553
    Cysteine-type peptidase (B6T6Y3_MAIZE)
    21
    Solyc09g008020.2
    +
    ExonS
    sly_circ_000799
    ch09:1500972-1503561
    Cysteine-type peptidase (B6T6Y3_MAIZE)
    22
    Solyc09g008020.2
    +
    ExonS
    sly_circ_001282
    ch09:1500972-1503099
    Cysteine-type peptidase (B6T6Y3_MAIZE)
    23
    Solyc10g006880.2
    -
    AltD
    sly_circ_001330
    ch10:1307213-1307526
    NAC domain protein (manually curated)
    24
    Solyc05g015210.2
    +
    ExonS
    sly_circ_000548
    ch05:10063412-10066958
    Transforming growth factor-beta receptor-associated protein 1 (TGFA1_MOUSE)
    25
    Solyc08g066700.2
    +
    IntronR
    sly_circ_000758
    ch08:55525683-55525805
    Polyribonucleotide nucleotidyltransferase (PNP_PROVI)
    26
    Solyc08g066700.2
    +
    IntronR
    sly_circ_000758
    ch08:55525683-55525805
    Polyribonucleotide nucleotidyltransferase (PNP_PROVI)
    27
    Solyc10g081610.1
    -
    ExonS
    sly_circ_000177
    ch10:62652995-62653141
    Ubiquitin carboxyl-terminal hydrolase family protein expressed (Q2R2A3_ORYSJ)
    28
    Solyc12g055720.1
    -
    AltD
    sly_circ_001451
    ch12:61691393-61691682
    Receptor like kinase, RLK
    29
    Solyc02g064740.2
    +
    ExonS
    sly_circ_000960
    ch02:35843192-35844046
    Chaperone protein DnaJ (D6TMN3_9CHLR)
    30
    Solyc12g089000.1
    -
    ExonS
    sly_circ_001457
    ch12:64171469-64172017
    Ariadne-like ubiquitin ligase (D3AZ84_POLPA)