Plant ASmiR Database

Download GFF file

Species Reference GFF File
Bamboo P.heterocycla-v1.0 gff file
Eucalyptus grandis GCF_000612305.1_Egrandis1_0_genomic gff file
Picea abies Pabies1.0-HC gff file
Pinus taeda Pita.LQgenes gff file
Populus trichocarpaV3 Ptrichocarpa_210_v3.0.gff gff file
Arabidopsis TophatExon.gff gff file

Download Proteins file

Species Reference Protein File
Bamboo P.heterocycla-v1.0 protein file
Eucalyptus grandis GCF_000612305.1_Egrandis1_0_protein protein file
Picea abies Pabies1.0-HC-pep protein file
Pinus taeda Pita.LQgenes.proteins protein file
Populus trichocarpaV3 Ptrichocarpa_210_v3.0.protein_primaryTranscriptOnly protein file
Arabidopsis TAIR10_pep_20110103_representative protein file

Download Transcript file

Species Reference Transcript File
Bamboo P.heterocycla-v1.0 transcript file
Eucalyptus grandis GCF_000612305.1_Egrandis1_0_genomic transcript file
Picea abies Pabies1.0-HC transcript file
Pinus taeda Ptaeda.v1.01 transcript file
Populus trichocarpaV3 Ptrichocarpa_210_v3.0.cds transcript file
Arabidopsis TAIR10_cds_20110103 transcript file

Download Genome file

Species Reference Genome File
Bamboo P.heterocycla-v1.0 genome file
Eucalyptus grandis GCF_000612305.1_Egrandis1_0_genomic genome file
Picea abies Pabies1.0-HC genome file
Pinus taeda Ptaeda.v1.01 genome file
Populus trichocarpaV3 Ptr genome file
Arabidopsis TAIR10 genome file

Download Alternative splicing List file

Species Reference Xls File
Bamboo P.heterocycla-v1.0 AS file
Eucalyptus grandis GCF_000612305.1_Egrandis1_0_genomic AS file
Picea abies Pabies1.0-HC AS file
Pinus taeda Ptaeda.v1.01 AS file
Populus trichocarpaV3 Ptr_v3 AS file
Arabidopsis TAIR10 AS file
Glycine max Glycine_max.V1.0.31 AS file
Solanum lycopersicum ITAG2.4 AS file
Oryza sativa TIGR7 AS file
Sorghum bicolor Sorghum_bicolor.Sorbi1.31 AS file
Zea mays Zea_mays.AGPv4.35 AS file

Download miRNA target sites locating at Genome

Species Reference GFF File
Bamboo P.heterocycla-v1.0 xls file
Eucalyptus grandis GCF_000612305.1_Egrandis1_0_genomic.gff xls file
Picea abies Pabies1.0-HC xls file
Pinus taeda Ptaeda.v1.01 xls file
Populus trichocarpaV3 Ptr_v3 xls file
Arabidopsis TAIR10 xls file
Glycine max Glycine_max.V1.0.31 xls file
Solanum lycopersicum ITAG2.4 xls file
Oryza sativa TIGR7 xls file
Sorghum bicolor Sorghum_bicolor.Sorbi1.31 xls file
Zea mays Zea_mays.AGPv4.35 xls file

Download miRNA target sites locating at the AS regions

Species Reference GFF File
Bamboo P.heterocycla-v1.0 xls file
Eucalyptus grandis GCF_000612305.1_Egrandis1_0_genomic.gff xls file
Picea abies Pabies1.0-HC xls file
Pinus taeda Ptaeda.v1.01 xls file
Populus trichocarpaV3 Ptr_v3 xls file
Arabidopsis TAIR10 xls file
Glycine max Glycine_max.V1.0.31 xls file
Solanum lycopersicum ITAG2.4 xls file
Oryza sativa TIGR7 xls file
Sorghum bicolor Sorghum_bicolor.Sorbi1.31 xls file
Zea mays Zea_mays.AGPv4.35 xls file